Environmental Science & Technology Research Works

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Emergy Basis of Forest Systems
(1999) Tilley, David
A major question in natural resource management is how to integrate economic-use activities with the supporting ecosystems to maximize performance of the ecological-economic system. In this dissertation, the natural wealth of forested systems of three different sizes was evaluated with emergy: two watersheds of the Southern Appalachians, Macon County (N.C.), and North Carolina. Emergy is the total amount of energy of one form that was required directly and indirectly to make another form of energy. Values are reported as emdollars (Em$) which represent the economic activity resulting from resource use. Benefits provided by forested watersheds were quantified based on emergy required to develop and maintain each service or product. Total wealth contributed by the multiple-use Wine Spring Creek (WSC) watershed was 4300 Em$/ha/y, and was divided among scientific research (3450 Em$/ha/y), water yield (2060 Em$/ha/y), recreation (1880 Em$/ha), and timber (1440 Em$/ha/y). In the 1990's, timber accounted for 3% of world emergy use, 1% in the United States, 9% in North Carolina, 14% in Macon County, and 8% in the WSC watershed. Forest ecosystems captured 53% of environmental emergy in North Carolina, 81% in Macon County, and 100% in the WSC watershed. The importance of forest ecosystems to the U.S. economy were evaluated based on emergy flows of the U.S. forest products industry and international trade of forest products in North America. In 1993, the U.S. had an annual trade surplus in forest products worth 63 billion Em$. Simple models were developed to explore the temporal and spatial dynamics of emergy and transformity in forested watersheds. Transformity is the ratio of emergy to energy; it measures position in the energy hierarchy of energy forms. Temporally, transformity and emergy lagged energy levels in reaching steady-state. Spatially, emergy from mountain uplands converged to the stream network, making water and its carved basin locations of high empower density. A model, MULTIBEN, evaluated forest empower of multiple benefits given various combinations of economic investment in recreation and timbering. Maximum empower was found at an intermediate level of economic investment, suggesting that an optimum intensity of forest development exists.
AN INVESTIGATION OF THE RELATIONSHIP BETWEEN THE LEVEL OF ANTIBIOTIC RESISTANCE OF ESCHERICHIA COLI IN NONTIDAL WETLANDS AND COMMON WETLAND HEALTH FACTORS
(2008-05-25) Agarwal, Neil; Ahearn, Sean; Dudziak, Erik; Khan, Sehba; Marcin, Daniel; Shofnos, Matthew; Skoda, Emily; Venkatachari, Padmasini; Vocke, Robert; Tilley, David
This report investigated the prevalence of antibiotic resistance among Escherichia coli in the water of 13 non-tidal mitigation wetlands in Maryland, and its relation to land use and wetland health. At each site, land use, surface and sub-surface water samples, soil samples, and vegetation cover were collected. From the water samples, individual colonies of E. coli were isolated and tested, using the disc diffusion method, for resistance to the antibiotics ampicillin, ciprofloxacin, erythromycin, sulfisoxazole, and tetracycline. According to soils, vegetation and water quality improvement criteria the wetlands function like healthy wetlands. The wetlands' E. coli exhibit resistance to all of the antibiotics tested, except for ciprofloxacin. There were statistically significant relationships found between land use and antibiotic resistance, vegetation, soil and water chemistry. Surprisingly, E. coli in wetlands with smaller stocks of carbon and nitrogen in their soil exhibited more resistance to tetracycline, possibly indicating that soil quality plays an important role in fostering or fighting antibiotic resistance. The work demonstrates that antibiotic resistance is present in Maryland's wetlands, but that its spread could be subdued by healthy wetlands.
Complete genome sequence of a marine roseophage provides evidence into the evolution of gene transfer agents in alphaproteobacteria
(Springer Nature, 2011-03-17) Huang, Sijun; Zhang, Yongyu; Chen, Feng; Jiao, Nianzhi
Roseophage RDJLΦ1 is a siphovirus isolated from South China Sea on Roseobacter denitrificans OCh114. Its virion encapsulates 62.7 kb genome that encodes 87 gene products. RDJLΦ1 shares similar genome organization and gene content with the marine bacteriophage ΦJL001 and Pseudomonas phages YuA and M6, which are different from those of typical λ- or Mu-like phages. Four hallmark genes (ORFs 81 to 84) of RDJLΦ1 were highly homologous to RcGTA-like genes 12 to 15. The largest gene (ORF 84) was predicted to encode a tail fibre protein that could be involved in host recognition. Extended phylogenetic and comparative genomic analyses based on 77 RcGTA-like element-containing bacterial genomes revealed that RcGTA-like genes 12 to 15 together appear to be a conserved modular element that could also be found in some phage or prophage genomes. Our study suggests that RcGTA-like genes-containing phages and prophages and complete RcGTAs possibly descended from a same prophage ancestor that had diverged and then evolved vertically. The complete genome of RDJLΦ1 provides evidence into the hypothesis that extant RcGTA may be a prophage remnant.
Mosquitoes Associated with Ditch-Plugged and Control Tidal Salt Marshes on the Delmarva Peninsula
(MDPI, 2011-07-25) Leisnham, Paul T.; Sandoval-Mohapatra, Sarah
A study was conducted during the summer of 2009 (from July to September) to characterize mosquito communities among different habitats in five historically ditched tidal salt marshes and three adjacent wooded areas in the E.A. Vaughn Wetland Management Area on the Maryland Delmarva Peninsula, USA. Study marshes are characteristic of Atlantic coastal salt marshes that had undergone grid ditching from the 1930s to 1950s. In the autumn of 2008 (October and November) ditches were plugged near their outlets in two (‘experimental’) marshes with the aim to restore their natural tidal hydrology. The three other marshes were not plugged. Marshes were sampled from July to September in 2009 by using standard dip count method. A total of 2,457 mosquito larvae representing six species were collected on 15.4% (86/557) of all sample occasions and 399 adults representing four mosquito species were collected from landing counts. Aedes sollicitans, Anopheles bradleyi and Culex salinarius were the most common species collected in larval habitats, and Ae. sollicitans was the most common adult collected. Wooded habitats had more total mosquitoes, were also more frequently occupied by mosquitoes and had higher densities of mosquitoes than marsh habitats. Almost all larvae collected from marshes were from one experimental and one control site. The majority of larvae at the control site were Ae. sollicitans in marsh pannes while Cx. salinarius, An. bradleyi, Ae. cantator, and Ae. sollicitans were collected in high numbers from ditches at the experimental site. We found a difference in the proportion of marsh pannes occupied by Ae. sollicitans but not total mosquitoes sampled 4–5 days after spring tide events than on other occasions. Salinity measures of 42 larval habitats showed lower median salinity in mosquito-occupied habitats (11.5 ppt) than unoccupied habitats (20.1 ppt), and in habitats in wooded areas followed by ditches and pannes in marsh areas. The results of this study suggest that wooded areas adjacent to salt marshes may be a substantial source of biting adult mosquitoes usually associated with salt marsh habitats and that ditch plugging may alter the productivity of mosquitoes on some marshes. We recommend future studies consider mosquito productivity from habitats surrounding salt marshes, and if assessments of marsh alterations are a goal, compare multiple experimental and control areas before and after treatments to determine if alterations have a consistent impact on regional mosquito production.
Photosynthetic and Growth Response of Sugar Maple (Acer saccharum Marsh.) Mature Trees and Seedlings to Calcium, Magnesium, and Nitrogen Additions in the Catskill Mountains, NY, USA
(PLOS (Public Library of Science), 2015-08-20) Momen, Bahram; Behling, Shawna J.; Lawrence, Greg B.; Sullivan, Joseph H.
Decline of sugar maple in North American forests has been attributed to changes in soil calcium (Ca) and nitrogen (N) by acidic precipitation. Although N is an essential and usually a limiting factor in forests, atmospheric N deposition may cause N-saturation leading to loss of soil Ca. Such changes can affect carbon gain and growth of sugar maple trees and seedlings. We applied a 2^2 factorial arrangement of N and dolomitic limestone containing Ca and Magnesium (Mg) to 12 forest plots in the Catskill Mountain region of NY, USA. To quantify the short-term effects, we measured photosynthetic-light responses of sugar maple mature trees and seedlings two or three times during two summers. We estimated maximum net photosynthesis (An-max) and its related light intensity (PAR at An-max), apparent quantum efficiency (Aqe), and light compensation point (LCP). To quantify the long-term effects, we measured basal area of living mature trees before and 4 and 8 years after treatment applications. Soil and foliar chemistry variables were also measured. Dolomitic limestone increased Ca, Mg, and pH in the soil Oe horizon. Mg was increased in the B horizon when comparing the plots receiving N with those receiving CaMg. In mature trees, foliar Ca and Mg concentrations were higher in the CaMg and N+CaMg plots than in the reference or N plots; foliar Ca concentration was higher in the N+CaMg plots compared with the CaMg plots, foliar Mg was higher in the CaMg plots than the N+CaMg plots; An-max was maximized due to N+CaMg treatment; Aqe decreased by N addition; and PAR at An-max increased by N or CaMg treatments alone, but the increase was maximized by their combination. No treatment effect was detected on basal areas of living mature trees four or eight years after treatment applications. In seedlings, An-max was increased by N+CaMg addition. The reference plots had an open herbaceous layer, but the plots receiving N had a dense monoculture of common woodfern in the forest floor, which can impede seedling survival.
The White Mountain Recreational Enterprise: Bio-Political Foundations for White Mountain Apache Natural Resource Control, 1945–1960
(MDPI, 2016-07-15) Tomblin, David C.
Among American Indian nations, the White Mountain Apache Tribe has been at the forefront of a struggle to control natural resource management within reservation boundaries. In 1952, they developed the first comprehensive tribal natural resource management program, the White Mountain Recreational Enterprise (WMRE), which became a cornerstone for fighting legal battles over the tribe’s right to manage cultural and natural resources on the reservation for the benefit of the tribal community rather than outside interests. This article examines how White Mountain Apaches used the WMRE, while embracing both Euro-American and Apache traditions, as an institutional foundation for resistance and exchange with Euro-American society so as to reassert control over tribal eco-cultural resources in east-central Arizona.
Directed plant cell-wall accumulation of iron: embedding co-catalyst for efficient biomass conversion
(Springer Nature, 2016-10-21) Lin, Chien-Yuan; Jakes, Joseph E.; Donohoe, Bryon S.; Ciesielski, Peter N.; Yang, Haibing; Gleber, Sophie-Charlotte; Vogt, Stefan; Ding, Shi-You; Peer, Wendy A.; Murphy, Angus S.; McCann, Maureen C.; Himmel, Michael E.; Tucker, Melvin P.; Wei, Hui
Plant lignocellulosic biomass is an abundant, renewable feedstock for the production of biobased fuels and chemicals. Previously, we showed that iron can act as a co-catalyst to improve the deconstruction of lignocellulosic biomass. However, directly adding iron catalysts into biomass prior to pretreatment is diffusion limited, and increases the cost of biorefinery operations. Recently, we developed a new strategy for expressing iron-storage protein ferritin intracellularly to accumulate iron as a catalyst for the downstream deconstruction of lignocellulosic biomass. In this study, we extend this approach by fusing the heterologous ferritin gene with a signal peptide for secretion into Arabidopsis cell walls (referred to here as FerEX). The transgenic Arabidopsis plants. FerEX. accumulated iron under both normal and iron-fertilized growth conditions; under the latter (iron-fertilized) condition, FerEX transgenic plants showed an increase in plant height and dry weight by 12 and 18 %, respectively, compared with the empty vector control plants. The SDS- and native-PAGE separation of cell-wall protein extracts followed by Western blot analyses confirmed the extracellular expression of ferritin in FerEX plants. Meanwhile, Perls' Prussian blue staining and X-ray fluorescence microscopy (XFM) maps revealed iron depositions in both the secondary and compound middle lamellae cell-wall layers, as well as in some of the corner compound middle lamella in FerEX. Remarkably, their harvested biomasses showed enhanced pretreatability and digestibility, releasing, respectively, 21 % more glucose and 34 % more xylose than the empty vector control plants. These values are significantly higher than those of our recently obtained ferritin intracellularly expressed plants. This study demonstrated that extracellular expression of ferritin in Arabidopsis can produce plants with increased growth and iron accumulation, and reduced thermal and enzymatic recalcitrance. The results are attributed to the intimate colocation of the iron co-catalyst and the cellulose and hemicellulose within the plant cell-wall region, supporting the genetic modification strategy for incorporating conversion catalysts into energy crops prior to harvesting or processing at the biorefinery.
Post-Deepwater Horizon Oil Spill Monitoring of Louisiana Salt Marshes Using Landsat Imagery
(MDPI, 2017-06-01) Mo, Yu; Kearney, Michael S.; Riter, J. C. Alexis
The Deepwater Horizon oil spill, the second largest marine oil spill in history, contaminated over a thousand kilometers of coastline in the Louisiana salt marshes and seriously threatened this valuable ecosystem. Measuring the impacts of the oil spill over the large and complex coast calls for the application of remote sensing techniques. This study develops a method for post-Deepwater Horizon oil spill monitoring of the damaged marsh vegetation using Landsat imagery. This study utilizes 10 years of Landsat data, from 2005 to 2014, to examine the longevity of the oil spill’s impacts on the marsh vegetation. AVIRIS data collected between 2010 and 2012 are used to validate the Landsat results. Landsat imagery documents the significant effect of oiling on the Normalized Difference Vegetation Index (NDVI) of the marsh vegetation in 2010 and 2011 (p < 0.01 in both cases). These results are corroborated by the AVIRIS data, which recorded the most severe impact in May 2011 followed by progressive recovery in October 2011 and October 2012. The Landsat imagery, combined with relevant environmental information and appropriate statistical tools, provides a robust and low-cost method for long-term post-oil spill monitoring of the marshes, revealing that the major aboveground impacts (at 30 m scale) of the Deepwater Horizon oil spill on Louisiana salt marshes lasted for two years. The method presented is applicable for other hazardous events whenever pre-event referencing and long-term post-event monitoring are desired, thereby offering an effective and economical tool for disaster management.
Bioethical Considerations of Advancing the Application of Marine Biotechnology and Aquaculture
(MDPI, 2017-06-24) Harrell, Reginal M.
Normative ethical considerations of growth of the marine biotechnology and aquaculture disciplines in biopharming, food production, and marine products commercialization from a bioethical perspective have been limited. This paucity of information begs the question of what constitutes a bioethical approach (i.e., respect for individuals or autonomy; beneficence, nonmaleficence, and justice) to marine biotechnology and aquaculture, and whether it is one that is appropriate for consideration. Currently, thoughtful discussion on the bioethical implications of use, development, and commercialization of marine organisms or their products, as well as potential environmental effects, defaults to human biomedicine as a model. One must question the validity of using human bioethical principlism moral norms for appropriating a responsible marine biotechnology and aquaculture ethic. When considering potential impacts within these disciplines, deference must be given to differing value systems in order to find common ground to advance knowledge and avoid emotive impasses that can hinder the science and its application. The import of bioethical considerations when conducting research and/or production is discussed. This discussion is directed toward applying bioethical principles toward technology used for food, biomedical development (e.g., biopharming), or as model species for advancement of knowledge for human diseases.
Primary blood-hosts of mosquitoes are influenced by social and ecological conditions in a complex urban landscape
(Springer Nature, 2018-04-10) Goodman, Heather; Egizi, Andrea; Fonseca, Dina M.; Leisnham, Paul T.; LaDeau, Shannon L.
Temperate urban landscapes support persistent and growing populations of Culex and Aedes mosquito vectors. Large urban mosquito populations can represent a significant risk for transmission of emergent arboviral infection. However, even large mosquito populations are only a risk to the animals they bite. The purpose of this study is to identify and assess spatial patterns of host-use in a temperate urban landscape with heterogeneous socio-economic and ecological conditions. Mosquito blood meals were collected from neighborhoods categorized along a socio-economic gradient in Baltimore, MD, USA. Blood meal hosts were identified for two Aedes (Ae. albopictus and Ae. japonicus) and three Culex (Cx. pipiens, Cx. restuans and Cx. salinarius) species. The brown rat (Rattus norvegicus) was the most frequently detected host in both Aedes species and Cx. salinarius. Human biting was evident in Aedes and Culex species and the proportion of human blood meals from Ae. albopictus varied significantly with neighborhood socio-economic status. Aedes albopictus was most likely to feed on human blood hosts (at 50%) in residential blocks categorized as having income above the city median, although there were still more total human bites detected from lower income blocks where Ae. albopictus was more abundant. Birds were the most frequently detected Culex blood hosts but were absent from all Aedes sampled. This study highlights fine-scale variation in host-use by medically important mosquito vectors and specifically investigates blood meal composition at spatial scales relevant to urban mosquito dispersal and human exposure. Further, the work emphasizes the importance of neighborhood economics and infrastructure management in shaping both the relative abundance of vectors and local blood feeding strategies. The invasive brown rat was an important blood source across vector species and neighborhoods in Baltimore. We show that social and economic conditions can be important predictors of transmission potential in urban landscapes and identify important questions about the role of rodents in supporting urban mosquito populations.
Linking stormwater Best Management Practices to social factors in two suburban watersheds
(PLoS, 2018-08-23) Maeda, P. Kanoko; Chanse, Victoria; Rockler, Amanda; Montas, Hubert; Shirmohammadi, Adel; Wilson, Sacoby; Leisnham, Paul T.
To reduce nutrient pollution in urban watersheds, residents need to voluntarily practice a range of stormwater Best Management Practices (BMPs). However, little is known about the underlying social factors that may act as barriers to BMP implementation. The overall goal of this study was to better understand barriers to BMP implementation by exploring the links among resident demographics, knowledge, and behaviors so that appropriate education can be more effectively developed and targeted. In 2014-2015, a detailed questionnaire was administered door-to-door to 299 randomly selected households in two sub-watersheds of the Chesapeake Bay basin to test relationships among resident demographics, knowledge and attitudes towards water resources and BMPs, and BMP implementation. Multifactor regression models showed that respondents who had greater knowledge of water resources and BMPs lived in households that implemented greater numbers of BMPs. In turn, resident BMP knowledge, or familiarity with BMPs, strongly varied with race and ownership status, with respondents who identified as Caucasian or within a collection of `Other' races, and who were home owners, having greater BMP knowledge than respondents who identified as African American and who were home renters, respectively. Renters and members of homeowner's associations were also less likely to implement BMPs independent of knowledge, possibly reflecting perceived or real bureaucratic or procedural barriers to good stormwater management. Overall, respondents preferred to receive educational materials on stormwater via pamphlets and YouTube videos. These results suggest that resident ownership status knowledge is important to determining the number of household BMPs, and that education outreach should probably target African American and renting households that have lower BMP knowledge and landlords and administrators of homeowner's associations using well-planned print and video educational media.
Utilization of the Maryland Environmental Justice Screening Tool: A Bladensburg, Maryland Case Study
(MDPI, 2019-01-26) Driver, Aubree; Mehdizadeh, Crystal; Bara-Garcia, Samuel; Bodenreider, Coline; Lewis, Jessica; Wilson, Sacoby
Maryland residents’ knowledge of environmental hazards and their health effects is limited, partly due to the absence of tools to map and visualize distribution of risk factors across sociodemographic groups. This study discusses the development of the Maryland EJSCREEN (MD EJSCREEN) tool by the National Center for Smart Growth in partnership with faculty at the University of Maryland School of Public Health. The tool assesses environmental justice risks similarly to the U.S. Environmental Protection Agency’s (USEPA) EJSCREEN tool and California’s tool, CalEnviroScreen 3.0. We discuss the architecture and functionality of the tool, indicators of importance, and how it compares to USEPA’s EJSCREEN and CalEnviroScreen. We demonstrate the use of MD EJSCREEN through a case study on Bladensburg, Maryland, a town in Prince George’s County (PG) with several environmental justice concerns including air pollution from traffic and a concrete plant. Comparison reveals that environmental and demographic indicators in MD EJSCREEN most closely resemble those in EPA EJSCREEN, while the scoring is most similar to CalEnviroScreen. Case study results show that Bladensburg has a Prince George’s environmental justice score of 0.99, and that National Air Toxics Assessment (NATA) air toxics cancer risk is concentrated in communities of color.
Urbanization Altered Bacterial and Archaeal Composition in Tidal Freshwater Wetlands Near Washington DC, USA, and Buenos Aires, Argentina
(MDPI, 2019-03-06) Gonzalez Mateu, Martina; Park, Cedric Evan; McAskill, Cullen Patrick; Baldwin, Andrew H.; Yarwood, Stephanie A.
Urban expansion causes coastal wetland loss, and environmental stressors associated with development can lead to wetland degradation and loss of ecosystem services. This study investigated the effect of urbanization on prokaryotic community composition in tidal freshwater wetlands. Sites in an urban, suburban, and rural setting were located near Buenos Aires, Argentina, and Washington D.C., USA.We sampled soil associated with two pairs of functionally similar plant species, and used Illumina sequencing of the 16S rRNA gene to examine changes in prokaryotic communities. Urban stressors included raw sewage inputs, nutrient pollution, and polycyclic aromatic hydrocarbons. Prokaryotic communities changed along the gradient (nested PerMANOVA, Buenos Aires: p = 0.005; Washington D.C.: p = 0.001), but did not differ between plant species within sites. Indicator taxa included Methanobacteria in rural sites, and nitrifying bacteria in urban sites, and we observed a decrease in methanogens and an increase in ammonia-oxidizers from rural to urban sites. Functional profiles in the Buenos Aires communities showed higher abundance of pathways related to nitrification and xenobiotic degradation in the urban site. These results suggest that changes in prokaryotic taxa across the gradient were due to surrounding stressors, and communities in urban and rural wetlands are likely carrying out different functions.
Urbanization Altered Bacterial and Archaeal Composition in Tidal Freshwater Wetlands Near Washington DC, USA, and Buenos Aires, Argentina
(MDPI, 2019-03-06) Gonzalez Mateu, Martina; Park, Cedric Evan; McAskill, Cullen Patrick; Baldwin, Andrew H.; Yarwood, Stephanie A.
Urban expansion causes coastal wetland loss, and environmental stressors associated with development can lead to wetland degradation and loss of ecosystem services. This study investigated the effect of urbanization on prokaryotic community composition in tidal freshwater wetlands. Sites in an urban, suburban, and rural setting were located near Buenos Aires, Argentina, and Washington D.C., USA. We sampled soil associated with two pairs of functionally similar plant species, and used Illumina sequencing of the 16S rRNA gene to examine changes in prokaryotic communities. Urban stressors included raw sewage inputs, nutrient pollution, and polycyclic aromatic hydrocarbons. Prokaryotic communities changed along the gradient (nested PerMANOVA, Buenos Aires: p = 0.005; Washington D.C.: p = 0.001), but did not differ between plant species within sites. Indicator taxa included Methanobacteria in rural sites, and nitrifying bacteria in urban sites, and we observed a decrease in methanogens and an increase in ammonia-oxidizers from rural to urban sites. Functional profiles in the Buenos Aires communities showed higher abundance of pathways related to nitrification and xenobiotic degradation in the urban site. These results suggest that changes in prokaryotic taxa across the gradient were due to surrounding stressors, and communities in urban and rural wetlands are likely carrying out different functions.
Metagenomics Reveals Bacterial and Archaeal Adaptation to Urban Land-Use: N Catabolism, Methanogenesis, and Nutrient Acquisition
(Frontiers Media, 2019-10-10) Epp Schmidt, Dietrich J.; Kotze, David Johan; Hornung, Erzsébet; Setälä, Heikki; Yesilonis, Ian; Szlavecz, Katalin; Dombos, Miklós; Pouyat, Richard; Cilliers, Sarel; Tóth, Zsolt; Yarwood, Stephanie
Urbanization results in the systemic conversion of land-use, driving habitat and biodiversity loss. The “urban convergence hypothesis” posits that urbanization represents a merging of habitat characteristics, in turn driving physiological and functional responses within the biotic community. To test this hypothesis, we sampled five cities (Baltimore, MD, United States; Helsinki and Lahti, Finland; Budapest, Hungary; Potchefstroom, South Africa) across four different biomes. Within each city, we sampled four land-use categories that represented a gradient of increasing disturbance and management (from least intervention to highest disturbance: reference, remnant, turf/lawn, and ruderal). Previously, we used amplicon sequencing that targeted bacteria/archaea (16S rRNA) and fungi (ITS) and reported convergence in the archaeal community. Here, we applied shotgun metagenomic sequencing and QPCR of functional genes to the same soil DNA extracts to test convergence in microbial function. Our results suggest that urban land-use drives changes in gene abundance related to both the soil N and C metabolism. Our updated analysis found taxonomic convergence in both the archaeal and bacterial community (16S amplicon data). Convergence of the archaea was driven by increased abundance of ammonia oxidizing archaea and genes for ammonia oxidation (QPCR and shotgun metagenomics). The proliferation of ammonia-oxidizers under turf and ruderal land-use likely also contributes to the previously documented convergence of soil mineral N pools. We also found a higher relative abundance of methanogens (amplicon sequencing), a higher relative abundance of gene sequences putatively identified as Ni-Fe hydrogenase and nickel uptake (shotgun metagenomics) under urban land-use; and a convergence of gene sequences putatively identified as contributing to the nickel transport function under urban turf sites. High levels of disturbance lead to a higher relative abundance of gene sequences putatively identified as multiple antibiotic resistance protein marA and multidrug efflux pump mexD, but did not lead to an overall convergence in antibiotic resistance gene sequences.
Auxin regulates adventitious root formation in tomato cuttings
(Springer Nature, 2019-10-21) Guan, Ling; Tayengwa, Reuben; Cheng, Zongming (Max); Peer, Wendy Ann; Murphy, Angus S.; Zhao, Mizhen
Adventitious root (AR) formation is a critical developmental process in cutting propagation for the horticultural industry. While auxin has been shown to regulate this process, the exact mechanism and details preceding AR formation remain unclear. Even though AR and lateral root (LR) formation share common developmental processes, there are exist some differences that need to be closely examined at the cytological level. Tomato stem cuttings, which readily form adventitious roots, represent the perfect system to study the influence of auxin on AR formation and to compare AR and LR organogenesis.
Effects of Detritus on the Mosquito Culex pipiens: Phragmites and Schedonorus (Festuca) Invasion Affect Population Performance
(MDPI, 2019-10-25) Leisnham, Paul T.; Scott, Brandon; Baldwin, Andrew H.; LaDeau, Shannon L.
Species interactions that influence the performance of the exotic mosquito Culex pipiens can have important effects on the transmission risk of West Nile virus (WNV). Invasive plants that alter the vegetation communities of ephemeral ground pools may facilitate or resist the spread of C. pipiens (L.) by altering allochthonous inputs of detritus in those pools. To test this hypothesis, we combined field surveys of roadside stormwater ditches with a laboratory microcosm experiment to examine relationships between C. pipiens performance and water quality in systems containing detritus from invasive Phragmites australis (Cav.) Trin. Ex Steud., introduced Schedonorus arundinaceus (Schreb.) Dumort., or native Juncus effusus L. or Typha latifolia L. In ditches, C. pipiens abundance was unrelated to detritus species but female C. pipiens were significantly larger from ditches with S. arundinaceus and smaller with J. effusus. Larger and smaller C. pipiens were also produced in microcosms provisioned with S. arundinaceus and J. effusus, respectively, yet the per capita rate of population of change did not vary. Larger females from habitats with S. arundinaceus were likely caused by faster decay rates of S. arundinaceus and resultant increases in microbial food, but lower survival as a result of fouling and higher tannin-lignin concentrations resulted in little changes to overall population performance. Larger female mosquitoes have been shown to have greater potential for transmitting arboviruses. Our findings suggest that changed community-level interactions from plant invasions in urban ephemeral ground pools can affect the fitness of C. pipiens and possibly increase WNV risk.
Effects of Detritus on the Mosquito Culex pipiens: Phragmites and Schedonorus (Festuca) Invasion Affect Population Performance
(MDPI, 2019-10-25) Leisnham, Paul T.; Scott, Brandon; Baldwin, Andrew H.; LaDeau, Shannon L.
Species interactions that influence the performance of the exotic mosquito Culex pipiens can have important effects on the transmission risk of West Nile virus (WNV). Invasive plants that alter the vegetation communities of ephemeral ground pools may facilitate or resist the spread of C. pipiens (L.) by altering allochthonous inputs of detritus in those pools. To test this hypothesis, we combined field surveys of roadside stormwater ditches with a laboratory microcosm experiment to examine relationships between C. pipiens performance and water quality in systems containing detritus from invasive Phragmites australis (Cav.) Trin. Ex Steud., introduced Schedonorus arundinaceus (Schreb.) Dumort., or native Juncus effusus L. or Typha latifolia L. In ditches, C. pipiens abundance was unrelated to detritus species but female C. pipiens were significantly larger from ditches with S. arundinaceus and smaller with J. effusus. Larger and smaller C. pipiens were also produced in microcosms provisioned with S. arundinaceus and J. effusus, respectively, yet the per capita rate of population of change did not vary. Larger females from habitats with S. arundinaceus were likely caused by faster decay rates of S. arundinaceus and resultant increases in microbial food, but lower survival as a result of fouling and higher tannin-lignin concentrations resulted in little changes to overall population performance. Larger female mosquitoes have been shown to have greater potential for transmitting arboviruses. Our findings suggest that changed community-level interactions from plant invasions in urban ephemeral ground pools can affect the fitness of C. pipiens and possibly increase WNV risk.
Methane and Hydrogen Sulfide Production from Co-Digestion of Gummy Waste with a Food Waste, Grease Waste, and Dairy Manure Mixture
(MDPI, 2019-11-23) Lansing, Stephanie; Choudhury, Abhinav
Co-digestion of dairy manure with waste organic substrates has been shown to increase the methane (CH4) yield of farm-scale anaerobic digestion (AD). A gummy vitamin waste (GVW) product was evaluated as an AD co-digestion substrate using batch AD testing. The GVW product was added at four inclusion levels (0%, 5%, 9%, and 23% on a wet mass basis) to a co-digestion substrate mixture of dairy manure (DM), food-waste (FW), and grease-waste (GW) and compared to mono-digestion of the GVW, DM, FW, and GW substrates. All GVW co-digestion treatments significantly increased CH4 yield by 126–151% (336–374 mL CH4/g volatile solids (VS)) compared to DM-only treatment (149 mL CH4/g VS). The GVW co-digestion treatments also significantly decreased the hydrogen sulfide (H2S) content in the biogas by 66–83% (35.1–71.9 mL H2S/kg VS) compared to DM-only (212 mL H2S/kg VS) due to the low sulfur (S) content in GVW waste. The study showed that GVW is a potentially valuable co-digestion substrate for dairy manure. The high density of VS and low moisture and S content of GVW resulted in higher CH4 yields and lower H2S concentrations, which could be economically beneficial for dairy farmers.
Evaluation of Hydrogen Sulfide Scrubbing Systems for Anaerobic Digesters on Two U.S. Dairy Farms
(MDPI, 2019-12-04) Choudhury, Abhinav; Shelford, Timothy; Felton, Gary; Gooch, Curt; Lansing, Stephanie
Hydrogen sulfide (H2S) is a corrosive trace gas present in biogas produced from anaerobic digestion systems that should be removed to reduce engine-generator set maintenance costs. This study was conducted to provide a more complete understanding of two H2S scrubbers in terms of efficiency, operational and maintenance parameters, capital and operational costs, and the effect of scrubber management on sustained H2S reduction potential. For this work, biogas H2S, CO2, O2, and CH4 concentrations were quantified for two existing H2S scrubbing systems (iron-oxide scrubber, and biological oxidation using air injection) located on two rural dairy farms. In the micro-aerated digester, the variability in biogas H2S concentration (average: 1938 ± 65 ppm) correlated with the O2 concentration (average: 0.030 ± 0.004%). For the iron-oxide scrubber, there was no significant difference in the H2S concentrations in the pre-scrubbed (450 ± 42 ppm) and post-scrubbed (430 ± 41 ppm) biogas due to the use of scrap iron and steel wool instead of proprietary iron oxide-based adsorbents often used for biogas desulfurization. Even though the capital and operating costs for the two scrubbing systems were low (<$1500/year), the lack of dedicated operators led to inefficient performance for the two scrubbing systems.