Biology Theses and Dissertations
Permanent URI for this collectionhttp://hdl.handle.net/1903/2749
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Item EFFECTS OF SEA LEVEL RISE ON TIDAL FRESHWATER, OLIGOHALINE, AND BRACKISH MARSHES: ACCRETION, NUTRIENT BURIAL, AND BIOGEOCHEMICAL PROCESSES(2019) Allen, Jenny; Baldwin, Andrew H; Marine-Estuarine-Environmental Sciences; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Tidal wetlands provide critically important ecosystem services such as storm surge and flood attenuation, pollution retention and transformation, and carbon sequestration. The ability of tidal wetlands to maintain surface elevation under accelerated sea level rise is critical for their persistence. Saltwater intrusion can further threaten tidal freshwater marshes by decreasing primary production and organic matter accumulation as well as cause shifts in microbial pathways, leading to increases in organic matter decomposition and an overall decrease in marsh elevation. The objectives of this research were to examine accretion dynamics across the estuarine gradient of the Nanticoke River, a major tributary of the Chesapeake Bay, and determine the relative contribution of organic and inorganic matter to accretion in the marshes; determine the accumulation rates of C, N, and P across the estuarine gradient; and examine the effects of sulfate intrusion on biogeochemical transformations and marsh surface elevation in tidal freshwater marsh soil. Results of the collective studies suggest that the mechanisms controlling accretion dynamics and nutrient accumulation are complex and are likely driven by site-specific factors rather than estuary-wide factors. Accretion rates and nutrient accumulation rates were highly variable across the estuarine gradient, but were largely dependent on both organic matter accumulation and inorganic sedimentation. Only 8 out of the 15 subsites had accretion rates higher than relative sea level rise for the area, with the lowest rates of accretion found in the oligohaline marshes. Organic matter accumulation is especially important in marshes with low mineral sediment supply, particularly mid-estuarine oligohaline marshes, but may not be enough to help keep these marshes above relative sea level. The tidal marshes along the Nanticoke River removed approximately 15% and 9% of the total N and P load entering the system, but their ability to continue to remove nutrients may be compromised due to rising sea levels. Shifts in microbial pathways and increases in organic matter decomposition due to saltwater intrusion further threaten the ability of these marshes to keep pace with sea level rise, potentially resulting in the loss of an extremely valuable ecosystem.Item Seasonal Migrations of Atlantic Sturgeon and Striped Bass Through the Maryland Wind Energy Area(2019) Rothermel, Ella Rick; Secor, David; Marine-Estuarine-Environmental Sciences; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Baseline information is needed on migrations through US Mid-Atlantic Bight shelf waters in advance of offshore wind development. Acoustically-tagged Atlantic sturgeon and striped bass were detected from 2016-2019 in an array of 20 acoustic telemetry receivers centered on the Maryland Wind Energy Area and extending 10-50 km offshore. Both species were transient (mean residency < 3 days), but migration patterns differed seasonally and were related to depth and temperature. Generalized additive models showed that Atlantic sturgeon occur at inshore sites during spring while striped bass shifted toward the outer shelf as inshore waters cooled in winter. The movement of hundreds of tagged striped bass and sturgeon, originating from shelf waters from Maine to South Carolina suggests that the Wind Energy Area is part of a multi-species Atlantic coastal flyway, particularly during spring, fall, and winter periods. Thus, summer presents a potential window for wind tower construction.Item The effect of salinity on species survival and carbon storage on the Lower Eastern Shore of Maryland due to saltwater intrusion(2019) de la Reguera, Elizabeth; Tully, Kate; Palmer, Margaret; Marine-Estuarine-Environmental Sciences; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)As sea levels continue to rise, coastal ecosystems are vulnerable to saltwater intrusion (SWI), the landward movement of sea salts. Specifically, in coastal farmlands, we expect SWI to drive changes in plant species composition and carbon (C) storage. As soils salinize, standard crops (i.e. corn, soybean, and wheat) can no longer survive and farmers must consider alternatives. Further, transitioning agricultural fields may become C sinks as SWI advances inland and farmlands begin to resemble tidal wetlands. My objectives were to determine: (1) the effect of SWI on the germination of standard and alternative crop species, and (2) the C storage potential of salt-intruded farmlands. Most standard and alternative crops were intolerant to high levels of osmotic and ionic stress at the germination stage. However, sorghum and salt-tolerant soybean showed promise in field experiments. I show that agricultural fields exposed to SWI have a high potential to store C in soils.Item Investigating the Distribution of CRISPR Adaptive Immune Systems Among Prokaryotes(2019) Weissman, Jake; Johnson, Philip L.F.; Biology; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Just as larger organisms face the constant threat of infection by pathogens, so too do bacteria and archaea. In response, prokaryotes employ a diverse set of strategies to simultaneously cope with their viral and physical environments. Here I explore the ecology and evolution of the CRISPR adaptive immune system, a powerful form of protection against viruses that is the only known example of adaptive immunity in prokaryotes. CRISPR systems are widespread across diverse bacterial and archaeal lineages, suggesting that CRISPR effectively defends against viruses in a broad array of environments. Nevertheless, this defense system is nearly absent in many bacterial groups, and in many environments. I focus on understanding these patterns in CRISPR incidence and the ecological drivers behind them. First, I identify the ecological conditions that favor the adoption of a CRISPR-based defense strategy. I develop a phylogenetically-conscious machine learning approach to build a predictive model of CRISPR incidence using data on over 100 phenotypic traits across over 2600 species and discovered a strong but hitherto-unknown negative interaction between CRISPR and aerobicity. I then consider the multiplicity of CRISPR arrays on a genome, testing whether or not selection favors redundancy in immunity. I use a comparative genomics approach, looking across all prokaryotes to demonstrate that on average, organisms are under selection to maintain more than one CRISPR array. I then explain this surprising result with a theoretical model demonstrating that a trade-off between memory span and learning speed could select for paired “long-term memory” and “short-term memory” CRISPR arrays. Finally, I provide a theoretical examination of the phenomenon of immune loss, specifically in the context of CRISPR immunity. In doing so, I propose an additional mechanism to answer the perennial question: “How do bacteria and bacteriophage coexist stably over long time-spans?” I show that the regular loss of immunity by the bacterial host can produce host-phage coexistence more reliably than other mechanisms, pairing a general model of immunity with an experimental and theoretical case study of CRISPR-based immunity.Item EFFECTS OF THE INVASIVE PHRAGMITES AUSTRALIS ON THE PREDATION OF MOSQUITOES THROUGH CHANGES IN HABITAT COMPLEXITY(2019) Weeks, Virginia Lynn; Leisnham, Paul; Marine-Estuarine-Environmental Sciences; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Ephemeral stormwater ponds in the eastern United States are often invaded by non-native Phragmites australis which has been associated with numerous negative impacts on resident systems, including changes in hydrology, displacement of native macrophytes, and degradation of wildlife habitat. Few studies have documented the impacts of invasive P.australis on macroinvertebrate communities. Vegetated edges of stormwater retention facilities are often important developmental habitat for medically significant mosquitoes and the invertebrate predators that regulate their abundances. The displacement of resident macrophytes by P.australis could alter the physical structure of pond vegetation and disrupt the interactions between mosquitoes and their visual predators. The overall goal of my thesis was to evaluate differences in habitat complexity between native macrophytes, T.latifolia and J.effuses, and P.australis, and explore how those differences may impact predation of mosquitoes. I addressed this goal by conducting a controlled laboratory predation experiment and field surveys of four stormwater ponds.Item ECOLOGICAL CAUSES AND CONSEQUENCES OF NON-BREEDING MOVEMENTS IN A DECLINING MIGRATORY SONGBIRD, WOOD THRUSH (HYLOCICHLA MUSTELINA)(2019) Stanley, Calandra Quinn; Dudash, Michele R; Marra, Peter P; Behavior, Ecology, Evolution and Systematics; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)In this dissertation I evaluate the ecological correlates of non-breeding space-use strategies and how these drive within and between season movement dynamics in a declining migratory songbird, wood thrush (Hylocichla mustelina). In Chapter 1, I deployed high-resolution GPS transmitters across 5 breeding populations to quantify habitat selection as wood thrush moved across the annual cycle. I found seasonal variation in habitat selection at the regional, landscape and local scales which suggests the factors driving the evolution of habitat selection preferences vary across seasons and environmental conditions. In Chapter 2, I combined radio telemetry and GPS tracking to examine how environmental conditions drove space-use strategies during the non-breeding stationary period. I found evidence that both small- and large-scale movement dynamics were dependent on moisture levels on tropical non-breeding grounds. At small spatial scales, dry conditions drove low food availability, reduced individual body condition and these individuals had larger home ranges. In this same chapter I integrated archival GPS tag data to demonstrate that wood thrush from across the breeding range engaged in permanent large-scale mid-winter shifts in home ranges and, similar to radio-tagged birds, that individuals from wetter, higher quality habitats were more likely to use this strategy. I suggest that the facultative movements are a condition-dependent strategy allowing wood thrush to find alternative habitats as conditions deteriorate across the dry season in their non-breeding grounds. Finally, to determine how food availability may influence timing of spring migration, I performed a food manipulation experiment with captive wood thrush in Chapter 3. I found that food availability and body condition modulated the intensity, but not onset, of migratory restlessness (Zugunruhe), an index of migratory disposition in captive birds. These results suggest that non-breeding food limitations could constrain migration preparation in wood thrush. Low food availability also advanced the onset of migratory fattening. I suggest that advancing migratory fattening when food availability is low may provide a mechanism to flexibly adjust migration timing under poor environmental conditions. Together these findings suggest that wood thrush exhibit a diversity of behavioural mechanisms to handle environmental heterogeneity across the annual cycle.Item THE INFLUENCE OF THE RIVER OTTER ON AQUATIC CONSERVATION IN THE GREATER YELLOWSTONE ECOSYSTEM: A SOCIO-ECOLOGICAL APPROACH TO EVALUATING CONSERVATION FLAGSHIPS(2019) Pearce, Kelly J; Stylinski, Cathlyn; Serfass, Thomas L; Marine-Estuarine-Environmental Sciences; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Large scale habitat loss, unprecedented rates of species extinction, and other biodiversity issues have prompted wildlife conservationists to increasingly apply the “flagship” species concept to guide conservation decision making. Flagships are designated based on their ability to serve a socio-economic role, attracting public attention and financial support to conservation initiatives. Critical to flagships success is selecting an appropriate flagship—one that will be widely supported and will not invoke ill-will among any stakeholders. Thus, determining if the species meets certain pre-established criteria that are known to influence social-psychological processes is a critical step in flagship selection. The river otter (Lontra canadensis) is a widely distributed apex predator and possesses various other socio-ecological traits that make it suitable for a flagship species. However, empirical evidence supporting the use of the river otter as a flagship is lacking. In this dissertation, I study the ability of the river otter to serve as a flagship species in the Greater Yellowstone Ecosystem, one of the largest intact temperate-zone ecosystems in the world. I examine visitor attitudes and perceived resource conflicts with river otters and anglers, assess visitor willingness to engage in pro-conservation behaviors to help river otter conservation, and estimate probability of viewing the river otter using camera-traps along the Snake River. In addition to fulfilling certain recommended criteria of a flagship species, such as having a large body size, being charismatic, encompassing a wide-spread geographic range, and being uncommon across the landscape, my results suggest that visitors and anglers have positive attitudes towards the river otter, and that exposure to the river otter increases people’s willingness to engage in pro-conservation behaviors to help conserve the river otter and its aquatic habitat. However, pre-existing negative media portrayals as well as low visibility of the species, are potential liabilities of the river otter as a conservation flagship. The studies in this dissertation deepen the understanding of river otter socio-ecology as well as develop and apply elements of a socio-ecological framework that refine the approach of effectively selecting a successful conservation flagship.Item Patterns of oyster natural mortality in Chesapeake Bay, Maryland during 1991-2017 and its relationships with environmental factors and disease(2019) Doering, Kathryn Leah; Wilberg, Michael J; Marine-Estuarine-Environmental Sciences; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)A common method of estimating natural mortality in bivalves includes several assumptions that are likely violated for oysters Crassostrea virginica in Chesapeake Bay, Maryland. In addition, while oyster disease dynamics are well studied spatially and temporally in the mid-Atlantic region, changes in disease-related relationships have not been investigated in Maryland. We developed a Bayesian estimator for natural mortality and applied it to oysters in Maryland. We then used the model output along with environmental factors and disease data to explore changes in the disease system over time. We found the largest differences in natural mortality estimates between the box count method and Bayesian model 1-3 years after a high mortality event. Some relationships changed over time in the disease system, most notably those associated with MSX, suggesting resistance to MSX has potentially developed. This work improves our estimates of natural mortality and understanding of oyster disease dynamics in Maryland.Item BIOLOGICAL CONNECTIVITY OF WETLAND AND STREAM HABITATS ON THE DELMARVA PENINSULA USING AQUATIC MACROINVERTEBRATES(2019) Couch, Brock Thomas; Lamp, William O; Behavior, Ecology, Evolution and Systematics; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Biological connectivity is the connection of habitats through the movement of organisms that need to utilize said habitats to maintain their life history. Macroinvertebrate communities in freshwater can create biological connectivity by dispersing between temporary and permanent water sources. For this study, I collected and analyzed seasonal and temporal macroinvertebrate data to understand macroinvertebrate communities in six Delmarva Bays and four surrounding streams and identify potential overlapping genera between habitats. Environmental data was also collected to understand seasonal and temporal similarities and differences between Delmarva Bays and streams. For environmental data, Delmarva Bays and streams were most similar during the winter sampling period and become progressively dissimilar until summer sampling periods. For macroinvertebrate data, there were seventeen overlapping taxa that were found within predator and collector-gather feeding guilds. From this data, I can conclude that there is a potential for isolated wetlands and streams to have a biological connection.Item Turion size advantage in the restoration of Vallisneria americana: the importance of genetic identity and diversity(2019) Carew, Anne; Engelhardt, Katia; Marine-Estuarine-Environmental Sciences; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)The restoration and rehabilitation of damaged ecosystems has become a worldwide endeavor utilizing vast resources and ecological knowledge to build functioning and resilient ecosystems. Biodiversity restoration increases the likelihood that present species are well-adapted to the environment or can complement each other in resource use. Genetic diversity in populations may increase establishment rate, resistance to invasion, and resilience in a changing world. In parallel field and greenhouse experiments, I established colonies of the submersed aquatic macrophyte Vallisneria americana. Colony survival and performance was affected by environmental conditions in the field and genotypic diversity in the greenhouse. In the presence of nonnative Hydrilla verticillata, V. americana height was reduced; however, biomass increased, suggesting resource partitioning in response to competition. These results suggest that genotypic identity and diversity are important in early establishment of plant populations and calls attention to designing restorations that incorporate genetic information about source populations.