Searching for SNPs with cloud computing

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dc.contributor.authorLangmead, Ben
dc.contributor.authorSchatz, Michael C
dc.contributor.authorLin, Jimmy
dc.contributor.authorPop, Mihai
dc.contributor.authorSalzberg, Steven L
dc.date.accessioned2021-11-22T15:21:22Z
dc.date.available2021-11-22T15:21:22Z
dc.date.issued2009-11-20
dc.description.abstractAs DNA sequencing outpaces improvements in computer speed, there is a critical need to accelerate tasks like alignment and SNP calling. Crossbow is a cloud-computing software tool that combines the aligner Bowtie and the SNP caller SOAPsnp. Executing in parallel using Hadoop, Crossbow analyzes data comprising 38-fold coverage of the human genome in three hours using a 320-CPU cluster rented from a cloud computing service for about $85. Crossbow is available from http://bowtie-bio.sourceforge.net/crossbow/ .en_US
dc.description.urihttps://doi.org/10.1186/gb-2009-10-11-r134
dc.identifierhttps://doi.org/10.13016/prui-n046
dc.identifier.citationLangmead, B., Schatz, M.C., Lin, J. et al. Searching for SNPs with cloud computing. Genome Biol 10, R134 (2009).en_US
dc.identifier.urihttp://hdl.handle.net/1903/28160
dc.language.isoen_USen_US
dc.publisherSpringer Natureen_US
dc.relation.isAvailableAtCollege of Computer, Mathematical & Physical Sciencesen_us
dc.relation.isAvailableAtDigital Repository at the University of Marylanden_us
dc.relation.isAvailableAtBiologyen_us
dc.relation.isAvailableAtUniversity of Maryland (College Park, MD)en_us
dc.subjectSingle Nucleotide Polymorphismen_US
dc.subjectCloud Computingen_US
dc.subjectAdditional Data Fileen_US
dc.subjectWall Clock Timeen_US
dc.subjectHeterozygous SNPsen_US
dc.titleSearching for SNPs with cloud computingen_US
dc.typeArticleen_US

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