Show simple item record

Simultaneous transcriptome profiling of Trypanosoma cruzi parasites and their human host cells.

dc.contributor.advisorEl-Sayed, Najib Men_US
dc.contributor.authorLi, Yuanen_US
dc.date.accessioned2014-10-11T05:51:20Z
dc.date.available2014-10-11T05:51:20Z
dc.date.issued2014en_US
dc.identifierhttps://doi.org/10.13016/M2NS3M
dc.identifier.urihttp://hdl.handle.net/1903/15782
dc.description.abstractThe genome of the kinetoplastid parasite Trypanosoma cruzi, causative agent of Chagas disease, was published nine years ago, yet a systematic and comprehensive analysis of the transcriptomes of the parasite and the human host has not been conducted. The parasite responds rapidly to transmission between arthropod vectors and mammalian hosts by undergoing complex cellular differentiation processes that are not well understood. In this study, we generated the first transcriptome map for both T. cruzi and infected human host cells across the infection cycle including time points of 4, 6, 12, 24, 48 and 72 hours post invasion with the next generation RNA sequencing technology (RNA-Seq). We also captured the transcriptome of the parasite in its bloodstream form (trypomastigote) and its replicative form inside insect vector (epimastigote). We successfully mapped transcribed regions for the pathogen at single nucleotide resolution on a genomic scale and characterized the RNA processing (trans-splicing and polyadenylation) events across its various developmental stages. Here we report the prevalent heterogeneity of RNA processing sites across the genome. We also note the preference of different primary sites in various developmental stages presenting as a potential and interesting approach of posttranscriptional regulation, which may hypothetically contribute to the survival of the parasite across different environments. Our work has significantly enhanced the current genome annotation of T. cruzi. In addition, using the T. cruzi and human genome sequence as reference, we explored these data with informatics tools to identify genes with significant regulation and successfully profiled gene expressions from both species simultaneously. We examined the subsets of differentially expressed genes both in the parasite and the host cell over the course of the infection to understand the mechanisms of invasion and intracellular survival strategy as well as host-pathogen interactions. T. cruzi genes that were significantly regulated during the infection process might present as new targets for drug development, whereas human genes that were significantly regulated might signal the immunoinflammatory response triggered by the manipulation of the parasite. Furthermore, we investigated the gene expression patterns of T. cruzi across its different developmental stages, clustered gene with similar patterns, and identified possible sequence motifs in coexpressed gene clusters.en_US
dc.language.isoenen_US
dc.titleSimultaneous transcriptome profiling of Trypanosoma cruzi parasites and their human host cells.en_US
dc.typeDissertationen_US
dc.contributor.publisherDigital Repository at the University of Marylanden_US
dc.contributor.publisherUniversity of Maryland (College Park, Md.)en_US
dc.contributor.departmentCell Biology & Molecular Geneticsen_US
dc.subject.pqcontrolledBioinformaticsen_US
dc.subject.pquncontrolledChagas Diseaseen_US
dc.subject.pquncontrolledhost-pathogen interactionen_US
dc.subject.pquncontrolledhumanen_US
dc.subject.pquncontrolledRNA-Seqen_US
dc.subject.pquncontrolledT. cruzien_US
dc.subject.pquncontrolledtranscriptomeen_US


Files in this item

Thumbnail
Thumbnail

This item appears in the following Collection(s)

Show simple item record