College of Agriculture & Natural Resources

Permanent URI for this communityhttp://hdl.handle.net/1903/1598

The collections in this community comprise faculty research works, as well as graduate theses and dissertations.

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Subject: search.filters.subject.Fungi

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Now showing 1 - 3 of 3
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    Epidemiology and Fungicide Sensitivity of Grape Late Season Bunch Rots in the Mid-Atlantic
    (2022) Cosseboom, Scott David; Hu, Mengjun; Plant Science and Landscape Architecture (PSLA); Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)
    This project aims to improve the management of late season bunch rots of grape (LSBR) whichcan be caused by a wide range of fungal pathogens. LSBR collectively have been an increasing issue in Mid-Atlantic vineyards, severely affecting grape yield and quality. Despite intensive fungicide spray programs and cultural practices, severe LSBR epidemics threaten the budding Mid-Atlantic wine industry. The basic plant pathological variables of host, pathogen, and environment were investigated to improve knowledge of the diseases involved, and therefore improve management strategies. The most common causal agents of LSBR in the Mid-Atlantic were found to be Botrytis cinerea and Colletotrichum spp. and the species identity of less common fungi was also investigated. The next most prevalent fungi associated with LSBR, Alternaria alternata, Aspergillus uvarum, and Neopestalotiopsis rosae were evaluated for pathogenicity in field experiments through the artificial inoculation of grape clusters. Second, the sensitivity of A. uvarum, B. cinerea, and N. rosae to commonly used chemical classes of fungicides was tested. Lastly, the optimal infection conditions and timing for Colletotrichum spp. were evaluated in laboratory, field, and greenhouse experiments, resulting in a quantitative inoculum tracking technique and a disease prediction model. These experiments were focused on solving practical and important disease management issues experienced by local grape growers, while conducting novel research that was applicable to the broader science community. Beyond the increased knowledge of the etiology and epidemiology of LSBR, the conclusions of this research could lead to reformed LSBR management strategies with the elimination of unnecessary and ineffective fungicide applications, increased accuracy and timing of management efforts, and increased marketable grape yield.
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    Not as Ubiquitous as We Thought: Taxonomic Crypsis, Hidden Diversity and Cryptic Speciation in the Cosmopolitan Fungus Thelonectria discophora (Nectriaceae, Hypocreales, Ascomycota)
    (PLoS One, 2013-10-18) Salgado-Salazar, Catalina; Rossman, Amy Y.; Chaverri, Priscila
    The distribution of microbial species, including fungi, has long been considered cosmopolitan. Recently, this perception has been challenged by molecular studies in historical biogeography, phylogeny and population genetics. Here we explore this issue using the fungal morphological species Thelonectria discophora, one of the most common species of fungi in the family Nectriaceae, encountered in almost all geographic regions and considered as a cosmopolitan taxon. In order to determine if T. discophora is a single cosmopolitan species or an assemblage of sibling species, we conducted various phylogenetic analyses, including standard gene concatenation, Bayesian concordance methods, and coalescent-based species tree reconstruction on isolates collected from a wide geographic range. Results show that diversity among isolates referred as T. discophora is greatly underestimated and that it represents a species complex. Within this complex, sixteen distinct highly supported lineages were recovered, each of which has a restricted geographic distribution and ecology. The taxonomic status of isolates regarded as T. discophora is reconsidered, and the assumed cosmopolitan distribution of this species is rejected. We discuss how assumptions about geographically widespread species have implications regarding their taxonomy, true diversity, biological diversity conservation, and ecological functions.
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    EVALUATING THE ENDOPHYTIC FUNGAL COMMUNITY IN PLANTED AND WILD RUBBER TREES (Hevea brasiliensis)
    (2012) Gazis, Romina O.; Chaverri, Priscila; Plant Science and Landscape Architecture (PSLA); Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)
    The main objectives of this dissertation project were to characterize and compare the fungal endophytic communities associated with rubber trees (Hevea brasiliensis) distributed in wild habitats and under plantations. This study recovered an extensive number of isolates (more than 2,500) from a large sample size (190 individual trees) distributed in diverse regions (various locations in Peru, Cameroon, and Mexico). Molecular and classic taxonomic tools were used to identify, quantify, describe, and compare the diversity of the different assemblages. Innovative phylogenetic analyses for species delimitation were superimposed with ecological data to recognize operational taxonomic units (OTUs) or "putative species" within commonly found species complexes, helping in the detection of meaningful differences between tree populations. Sapwood and leaf fragments showed high infection frequency, but sapwood was inhabited by a significantly higher number of species. More than 700 OTUs were recovered, supporting the hypothesis that tropical fungal endophytes are highly diverse. Furthermore, this study shows that not only leaf tissue can harbor a high diversity of endophytes, but also that sapwood can contain an even more diverse assemblage. Wild and managed habitats presented high species richness of comparable complexity (phylogenetic diversity). Nevertheless, main differences were found in the assemblage's taxonomic composition and frequency of specific strains. Trees growing within their native range were dominated by strains belonging to Trichoderma and even though they were also present in managed trees, plantations trees were dominated by strains of Colletotrichum. Species of Trichoderma are known for their biocontrol properties, whereas species of Colletotrichum have been always associated with plant disease.