Epidemiology & Biostatistics Research Works
Permanent URI for this collectionhttp://hdl.handle.net/1903/7128
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Item Census Tract Food Tweets and Chronic Disease Outcomes in the U.S., 2015–2018(MDPI, 2019-03-18) Huang, Yuru; Huang, Dina; Nguyen, Quynh C.There is a growing recognition of social media data as being useful for understanding local area patterns. In this study, we sought to utilize geotagged tweets—specifically, the frequency and type of food mentions—to understand the neighborhood food environment and the social modeling of food behavior. Additionally, we examined associations between aggregated food-related tweet characteristics and prevalent chronic health outcomes at the census tract level. We used a Twitter streaming application programming interface (API) to continuously collect ~1% random sample of public tweets in the United States. A total of 4,785,104 geotagged food tweets from 71,844 census tracts were collected from April 2015 to May 2018. We obtained census tract chronic disease outcomes from the CDC 500 Cities Project. We investigated associations between Twitter-derived food variables and chronic outcomes (obesity, diabetes and high blood pressure) using the median regression. Census tracts with higher average calories per tweet, less frequent healthy food mentions, and a higher percentage of food tweets about fast food had higher obesity and hypertension prevalence. Twitter-derived food variables were not predictive of diabetes prevalence. Food-related tweets can be leveraged to help characterize the neighborhood social and food environment, which in turn are linked with community levels of obesity and hypertension.Item Google Street View Derived Built Environment Indicators and Associations with State-Level Obesity, Physical Activity, and Chronic Disease Mortality in the United States(MDPI, 2020-05-22) Phan, Lynn; Yu, Weijun; Keralis, Jessica M.; Mukhija, Krishay; Dwivedi, Pallavi; Brunisholz, Kimberly D.; Javanmardi, Mehran; Tasdizen, Tolga; Nguyen, Quynh C.Previous studies have demonstrated that there is a high possibility that the presence of certain built environment characteristics can influence health outcomes, especially those related to obesity and physical activity. We examined the associations between select neighborhood built environment indicators (crosswalks, non-single family home buildings, single-lane roads, and visible wires), and health outcomes, including obesity, diabetes, cardiovascular disease, and premature mortality, at the state level. We utilized 31,247,167 images collected from Google Street View to create indicators for neighborhood built environment characteristics using deep learning techniques. Adjusted linear regression models were used to estimate the associations between aggregated built environment indicators and state-level health outcomes. Our results indicated that the presence of a crosswalk was associated with reductions in obesity and premature mortality. Visible wires were associated with increased obesity, decreased physical activity, and increases in premature mortality, diabetes mortality, and cardiovascular mortality (however, these results were not significant). Non-single family homes were associated with decreased diabetes and premature mortality, as well as increased physical activity and park and recreational access. Single-lane roads were associated with increased obesity and decreased park access. The findings of our study demonstrated that built environment features may be associated with a variety of adverse health outcomes.Item Using 164 Million Google Street View Images to Derive Built Environment Predictors of COVID-19 Cases(MDPI, 2020-09-01) Nguyen, Quynh C.; Huang, Yuru; Kumar, Abhinav; Duan, Haoshu; Keralis, Jessica M.; Dwivedi, Pallavi; Meng, Hsien-Wen; Brunisholz, Kimberly D.; Jay, Jonathan; Javanmardi, Mehran; Tasdizen, TolgaThe spread of COVID-19 is not evenly distributed. Neighborhood environments may structure risks and resources that produce COVID-19 disparities. Neighborhood built environments that allow greater flow of people into an area or impede social distancing practices may increase residents’ risk for contracting the virus. We leveraged Google Street View (GSV) images and computer vision to detect built environment features (presence of a crosswalk, non-single family home, single-lane roads, dilapidated building and visible wires). We utilized Poisson regression models to determine associations of built environment characteristics with COVID-19 cases. Indicators of mixed land use (non-single family home), walkability (sidewalks), and physical disorder (dilapidated buildings and visible wires) were connected with higher COVID-19 cases. Indicators of lower urban development (single lane roads and green streets) were connected with fewer COVID-19 cases. Percent black and percent with less than a high school education were associated with more COVID-19 cases. Our findings suggest that built environment characteristics can help characterize community-level COVID-19 risk. Sociodemographic disparities also highlight differential COVID-19 risk across groups of people. Computer vision and big data image sources make national studies of built environment effects on COVID-19 risk possible, to inform local area decision-making.Item Racial and Sex Differences between Urinary Phthalates and Metabolic Syndrome among U.S. Adults: NHANES 2005–2014(MDPI, 2021-06-26) Ghosh, Rajrupa; Haque, Mefruz; Turner, Paul C.; Cruz-Cano, Raul; Dallal, Cher M.Phthalates, plasticizers ubiquitous in household and personal care products, have been associated with metabolic disturbances. Despite the noted racial differences in phthalate exposure and the prevalence of metabolic syndrome (MetS), it remains unclear whether associations between phthalate metabolites and MetS vary by race and sex. A cross-sectional analysis was conducted among 10,017 adults from the National Health and Nutritional Examination Survey (2005–2014). Prevalence odds ratios (POR) and 95% confidence intervals (CIs) were estimated for the association between 11 urinary phthalate metabolites and MetS using weighted sex and race stratified multivariable logistic regression. Higher MCOP levels were significantly associated with increased odds of MetS among women but not men, and only remained significant among White women (POR Q4 vs. Q1 = 1.68, 95% CI: 1.24, 2.29; p-trend = 0.001). Similarly, the inverse association observed with MEHP among women, persisted among White women only (POR Q4 vs. Q1 = 0.53, 95% CI: 0.35, 0.80; p-trend = 0.003). However, ΣDEHP metabolites were associated with increased odds of MetS only among men, and this finding was limited to White men (POR Q4 vs. Q1 = 1.54, 95% CI: 1.01, 2.35; p-trend = 0.06). Among Black men, an inverse association was observed with higher MEP levels (POR Q4 vs. Q1 = 0.43, 95% CI: 0.24, 0.77; p-trend = 0.01). The findings suggest differential associations between phthalate metabolites and MetS by sex and race/ethnicity.Item Google Street View-Derived Neighborhood Characteristics in California Associated with Coronary Heart Disease, Hypertension, Diabetes(MDPI, 2021-10-03) Nguyen, Thu T.; Nguyen, Quynh C.; Rubinsky, Anna D.; Tasdizen, Tolga; Deligani, Amir Hossein Nazem; Dwivedi, Pallavi; Whitaker, Ross; Fields, Jessica D.; DeRouen, Mindy C.; Mane, Heran; Lyles, Courtney R.; Brunisholz, Kim D.; Bibbins-Domingo, KirstenCharacteristics of the neighborhood built environment influence health and health behavior. Google Street View (GSV) images may facilitate measures of the neighborhood environment that are meaningful, practical, and adaptable to any geographic boundary. We used GSV images and computer vision to characterize neighborhood environments (green streets, visible utility wires, and dilapidated buildings) and examined cross-sectional associations with chronic health outcomes among patients from the University of California, San Francisco Health system with outpatient visits from 2015 to 2017. Logistic regression models were adjusted for patient age, sex, marital status, race/ethnicity, insurance status, English as preferred language, assignment of a primary care provider, and neighborhood socioeconomic status of the census tract in which the patient resided. Among 214,163 patients residing in California, those living in communities in the highest tertile of green streets had 16–29% lower prevalence of coronary artery disease, hypertension, and diabetes compared to those living in communities in the lowest tertile. Conversely, a higher presence of visible utility wires overhead was associated with 10–26% more coronary artery disease and hypertension, and a higher presence of dilapidated buildings was associated with 12–20% greater prevalence of coronary artery disease, hypertension, and diabetes. GSV images and computer vision models can be used to understand contextual factors influencing patient health outcomes and inform structural and place-based interventions to promote population health.Item Meta-Analysis of Transcriptome-Wide Association Studies across 13 Brain Tissues Identified Novel Clusters of Genes Associated with Nicotine Addiction(MDPI, 2021-12-23) Ye, Zhenyao; Mo, Chen; Ke, Hongjie; Yan, Qi; Chen, Chixiang; Kochunov, Peter; Hong, L. Elliot; Mitchell, Braxton D.; Chen, Shuo; Ma, TianzhouGenome-wide association studies (GWAS) have identified and reproduced thousands of diseases associated loci, but many of them are not directly interpretable due to the strong linkage disequilibrium among variants. Transcriptome-wide association studies (TWAS) incorporated expression quantitative trait loci (eQTL) cohorts as a reference panel to detect associations with the phenotype at the gene level and have been gaining popularity in recent years. For nicotine addiction, several important susceptible genetic variants were identified by GWAS, but TWAS that detected genes associated with nicotine addiction and unveiled the underlying molecular mechanism were still lacking. In this study, we used eQTL data from the Genotype-Tissue Expression (GTEx) consortium as a reference panel to conduct tissue-specific TWAS on cigarettes per day (CPD) over thirteen brain tissues in two large cohorts: UK Biobank (UKBB; number of participants (N) = 142,202) and the GWAS & Sequencing Consortium of Alcohol and Nicotine use (GSCAN; N = 143,210), then meta-analyzing the results across tissues while considering the heterogeneity across tissues. We identified three major clusters of genes with different meta-patterns across tissues consistent in both cohorts, including homogenous genes associated with CPD in all brain tissues; partially homogeneous genes associated with CPD in cortex, cerebellum, and hippocampus tissues; and, lastly, the tissue-specific genes associated with CPD in only a few specific brain tissues. Downstream enrichment analyses on each gene cluster identified unique biological pathways associated with CPD and provided important biological insights into the regulatory mechanism of nicotine dependence in the brain.Item Google Street View Images as Predictors of Patient Health Outcomes, 2017–2019(MDPI, 2022-01-27) Nguyen, Quynh C.; Belnap, Tom; Dwivedi, Pallavi; Deligani, Amir Hossein Nazem; Kumar, Abhinav; Li, Dapeng; Whitaker, Ross; Keralis, Jessica; Mane, Heran; Yue, Xiaohe; Nguyen, Thu T.; Tasdizen, Tolga; Brunisholz, Kim D.Collecting neighborhood data can both be time- and resource-intensive, especially across broad geographies. In this study, we leveraged 1.4 million publicly available Google Street View (GSV) images from Utah to construct indicators of the neighborhood built environment and evaluate their associations with 2017–2019 health outcomes of approximately one-third of the population living in Utah. The use of electronic medical records allows for the assessment of associations between neighborhood characteristics and individual-level health outcomes while controlling for predisposing factors, which distinguishes this study from previous GSV studies that were ecological in nature. Among 938,085 adult patients, we found that individuals living in communities in the highest tertiles of green streets and non-single-family homes have 10–27% lower diabetes, uncontrolled diabetes, hypertension, and obesity, but higher substance use disorders—controlling for age, White race, Hispanic ethnicity, religion, marital status, health insurance, and area deprivation index. Conversely, the presence of visible utility wires overhead was associated with 5–10% more diabetes, uncontrolled diabetes, hypertension, obesity, and substance use disorders. Our study found that non-single-family and green streets were related to a lower prevalence of chronic conditions, while visible utility wires and single-lane roads were connected with a higher burden of chronic conditions. These contextual characteristics can better help healthcare organizations understand the drivers of their patients’ health by further considering patients’ residential environments, which present both risks and resources.Item Pre-Exposure Prophylaxis Interventions among Black Sexual Minority Men: A Systematic Literature Review(MDPI, 2022-02-09) Turpin, Rodman E.; Hawthorne, David J.; Rosario, Andre D.Background: Interventions to promote HIV pre-exposure prophylaxis (PrEP) among Black sexual minority men (BSMM) are especially important, given the disproportionate HIV incidence and relatively low uptake of PrEP among BSMM. Methods: We conducted a systematic literature review to identify the characteristics of interventions between 2016 and 2021 promoting PrEP use among BSMM. We synthesized these studies based on sample size, location, the use of peer-based delivery, and key intervention targets. Results: Of the starting total 198 articles, 10 were included in the final review, with the majority of included studies being randomized controlled trials. We identified providing PrEP access, PrEP counseling, HIV and PrEP education, linkage to general health care, and peer-based support as key successful intervention components. The starkest difference between interventions with and without demonstrated PrEP improvements was the outcome: all interventions focused on PrEP initiation led to large improvements, but those focused on PrEP adherence did not. No other factors demonstrated distinct differences between successful and unsuccessful interventions. Conclusion: We identified notable differences in intervention efficacy between PrEP initiation and PrEP adherence outcomes; PrEP adherence is necessary for optimal HIV prevention. Future interventions promoting and measuring PrEP adherence, with a focus on cultural competence and peer components, are recommended.Item Multivariate Threshold Regression Models with Cure Rates: Identification and Estimation in the Presence of the Esscher Property(MDPI, 2022-02-11) Lee, Mei-Ling Ting; Whitmore, George A.The first hitting time of a boundary or threshold by the sample path of a stochastic process is the central concept of threshold regression models for survival data analysis. Regression functions for the process and threshold parameters in these models are multivariate combinations of explanatory variates. The stochastic process under investigation may be a univariate stochastic process or a multivariate stochastic process. The stochastic processes of interest to us in this report are those that possess stationary independent increments (i.e., Lévy processes) as well as the Esscher property. The Esscher transform is a transformation of probability density functions that has applications in actuarial science, financial engineering, and other fields. Lévy processes with this property are often encountered in practical applications. Frequently, these applications also involve a ‘cure rate’ fraction because some individuals are susceptible to failure and others not. Cure rates may arise endogenously from the model alone or exogenously from mixing of distinct statistical populations in the data set. We show, using both theoretical analysis and case demonstrations, that model estimates derived from typical survival data may not be able to distinguish between individuals in the cure rate fraction who are not susceptible to failure and those who may be susceptible to failure but escape the fate by chance. The ambiguity is aggravated by right censoring of survival times and by minor misspecifications of the model. Slightly incorrect specifications for regression functions or for the stochastic process can lead to problems with model identification and estimation. In this situation, additional guidance for estimating the fraction of non-susceptibles must come from subject matter expertise or from data types other than survival times, censored or otherwise. The identifiability issue is confronted directly in threshold regression but is also present when applying other kinds of models commonly used for survival data analysis. Other methods, however, usually do not provide a framework for recognizing or dealing with the issue and so the issue is often unintentionally ignored. The theoretical foundations of this work are set out, which presents new and somewhat surprising results for the first hitting time distributions of Lévy processes that have the Esscher property.Item Sexual Risk Behavior and Lifetime HIV Testing: The Role of Adverse Childhood Experiences(MDPI, 2022-04-05) Dyer, Typhayne V.; Turpin, Rodman E.; Hawthorne, David J.; Jain, Vardhmaan; Sayam, Sonica; Mittal, MonaDespite the success of HIV prevention drugs such as PrEP, HIV incident transmission rates remain a significant problem in the United States. A life-course perspective, including experiences of childhood adversity, may be useful in addressing the HIV epidemic. This paper used 2019 BRFSS data to elucidate the role that childhood adversity plays in the relationship between HIV risk and HIV testing. Participants (n = 58,258) completed self-report measures of HIV risk behaviors, HIV testing, and adverse childhood experiences (ACEs). The median number ACEs in the sample was 1, with verbal abuse (33.9%), and parental separation (31.3%) being the most common ACEs reported. Bivariate findings showed that all ACEs were associated with increased HIV risk and testing. However, increased risk was not correlated with increased HIV testing, with the highest incongruence related to mental health problems of household member (53.48%). While both self-reported HIV risk and ACEs were positively associated with HIV testing, their interaction had a negative association with testing (aPR = 0.51, 95%CI 0.42, 0.62). The results highlight the need for targeted HIV prevention strategies for at-risk individuals with a history of childhood adversity.