Theses and Dissertations from UMD
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New submissions to the thesis/dissertation collections are added automatically as they are received from the Graduate School. Currently, the Graduate School deposits all theses and dissertations from a given semester after the official graduation date. This means that there may be up to a 4 month delay in the appearance of a give thesis/dissertation in DRUM
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Item Bringing New Chemistry to Guanosine Hydrogels(2020) Xiao, Songjun; Davis, Jeffery T; Chemistry; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Molecular self-assembly is a powerful method to construct functional materials such as supramolecular hydrogels. Hydrogels contain mostly water but show solid-like rheology. Nucleosides and nucleotides contain rich recognition information, which opens up opportunities for gelator design. Hydrogels derived from these natural products have seen a resurgence in the past decade due to the high biodegradability and biocompatibility. Guanosine (G 1) and its analogs are powerful supramolecular hydrogelators. The structural basis for most guanosine hydrogels is G4•M+ quartet with K+ being the best metal to stabilize such a structure. These hydrogen-bonded macrocycles further stack to form 1D G-quadruplex that traps water to give hydrogels. Guanosine hydrogels have been used for applications such as bioactive molecule trap and release, environmental remediation, sensing and cell culture. While the H-bonded G-quadruplex is critical for gelation, G 1 can be synthetically modified to introduce new functions. The work presented here is focused on G-quartet hydrogels made from synthetic guanosine analogs. Guanosine analogs containing sulfur on 8- and 5ʹ-position are purified and their hydrogelation properties in water were examined. The resulting hydrogels can potentially be applied to environmental remediation. Substitution of 5ʹ-OH in G 1 into a hydrazine group in HG 2 significantly improves the hydrogelation properties. The resulting HG 2 KCl hydrogel can be used to non-covalently bind anionic dyes and covalently trap toxic electrophiles such as acrolein. A binary mixture of G 1 and HAG 15 forms a stable hydrogel with KCl. The hydroxamic acid group in HAG 15 serves as a pH-switchable group that can be applied as a carboxylic acid substitute in hydrogelator design. Furthermore, the hydrogel serves as a supramolecular siderophore and binds Fe3+ to generate patterns on the gel surface. The surface can be erased with a reducing agent and rewritten with Fe3+.Item Tailoring Guanosine Hydrogels for Various Applications(2018) Plank, Taylor Nicole; Davis, Jeffery T; Chemistry; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Supramolecular hydrogels are of current interest for their ease of use, potential biocompatibility, and reactivity to stimuli. These gel materials have found use in a number of fields ranging from drug delivery and tissue engineering to sensing and environmental remediation. For over a century, guanosine (G 1) and its derivatives have been known to form hydrogels based on self-assembled G4-quartet structures. Recent research has focused on extending the lifetime stability of these hydrogels and modifying their properties to better suit the gels for applications in multiple fields. One such method involves the mixing of G 1 (or G-derivatives) with 0.5 eq of KB(OH)4, which results in the formation of guanosine-borate (GB) diesters. The GB-diesters self-assemble into G4-quartets stabilized by K+, the G4-quartets then stack to form wires that entangle to make a fibrous hydrogel network. This thesis details modifications of this GB-hydrogel system and explores applications of the resulting hydrogels. Modification of the 5ʹ-OH group of G 1 to form 5ʹ-deoxy-5ʹ-iodoguanosine (5ʹ-IG 2) results in a hydrogel that self-destructs via intramolecular cyclization to 5ʹ-deoxy-N3,5ʹ-cycloguanosine (5ʹ-cG 3). Guanine analog drugs can be incorporated into this hydrogel network and then released upon self-destruction of the gel. Substitution of boric acid with benzene-1,4-diboronic acid (BDBA 4) to form hydrogels with G 1 and K+ results in hydrogels that can be crosslinked with Mg2+. These G-BDBA-Mg hydrogels have a lower critical gelator concentration (cgc) than their non-crosslinked counterparts and can be used for cell growth applications. Utilizing binary mixtures of 8-aminoguanosine (8AmG 5) with G 1 allows for the formation of hydrogels with various salts. Hydrogels made of different salts preferentially absorb either cationic or anionic dyes from water, making them candidates for use in environmental remediation. Other 8-substituted G-analogs, including, 8-bromoguanosine (8BrG 6), 8-iodoguanosine (8IG 7), and 8-morpholinoguanosine (8morphG 8) can be used in binary mixtures with G 1 to form gels at room temperature upon mixing with KB(OH)4. Room temperature hydrogels have potential applications in enzyme immobilization, drug encapsulation, and environmental cleanup.Item Guanosine-borate hydrogels- Form and function(2015) Peters, Gretchen Marie; Davis, Jeffery T; Chemistry; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)Due to their biocompatibility and stimuli-responsive nature, supramolecular hydrogels derived from natural products are attractive for a number of biomedical applications, including diagnostics, targeted drug delivery and tissue engineering. Nucleosides, the building blocks of nucleic acids, are desirable candidates for forming supramolecular gels as they readily engage in reversible, noncovalent interactions. Guanosine (G 1), in particular, is unique in that it has multiple faces for noncovalent interactions and can self-associate into stable higher-order assemblies, such as G4-quartets and G-quadruplexes. This self-assembly of G 1 and its derivatives into G4-quartets has long been known to induce hydrogelation. However, the requirement of excess salt and the propensity of G 1 to crystallize persist as limitations for G4-hydrogels. Thus, recent interest has focused on developing G4-hydrogels with improved lifetime stabilities and lower salt concentrations. The work described here focuses on a long-lived G4-hydrogel made from G 1 and 0.5 equiv. of KB(OH)4. Gelation occurs through the formation of guanosine-borate (GB) diesters and subsequent assembly into cation-templated G4•K+-quartets. The physical properties and stability of the GB hydrogel can be readily manipulated by varying the gelation components. For example, merely altering the identity of the cation drastically alters the gel’s physical properties. Namely, while GB hydrogels formed with K+ are self-supporting and robust, mixing G 1 with LiB(OH)4 results in a weak gel that readily dissociates upon physical agitation. Small molecules, such as cationic dyes and nucleosides, could be selectively incorporated into the GB hydrogel through reversible noncovalent and covalent interactions. One such dye and known G4-quartet binding ligand, thioflavin T (ThT) fluoresces in the presence of the GB hydrogel. The ThT fluorescence increases as a function of gelator concentration with a sharp increase correlating to the gel point. Thus, this ThT fluorescence assay is a new method for probing the formation of G4-hydrogels. Additionally, ThT acts as a molecular chaperone for Li+ GB hydrogelation. Substoichiometric amounts of ThT results in faster hydrogelation, increased gel strength and improved recovery of a hydrogel destroyed by external stress. Insights gained from this research have implications towards development of biomaterials, biomolecule sensing, and drug delivery.Item Lipophilic G-Quadruplexes: Structural Studies, Post-Assembly Modification, and Covalent Capture(2006-08-29) Kaucher, Mark Steven; Davis, Jeffery T; Chemistry; Digital Repository at the University of Maryland; University of Maryland (College Park, Md.)New nanostructures and functional materials are built through the self-assembly of guanosine. Both the size and regiochemistry of these noncovalent structures are controlled. Lipophilic G-quadruplexes are further stabilized through covalent capture techniques. These new nanostructures demonstrate the ability to bind cations and transport monovalent cation through phospholipid membranes. Diffusion NMR is demonstrated as a valuable technique in characterizing the size of lipophilic G-quadruplexes. Control over the size of self-assembled G-quadruplexes is demonstrated through modifying the guanosine nucleosides and the cation concentration. The solution structure of [G 8]16 4K+ 4pic- is determined to be a hexadecamer using diffusion NMR. Additionally, G 24 is also shown to form a hexadecamer G-quadruplex, which has an octameric intermediate structure. Two different octamers, a singly and doubly charged octamer, formed by G 29 are elucidated by diffusion NMR. The information gained from the diffusion NMR technique allowed for a better understanding of the self-assembly processes, especially regarding the roles of cation, anion and solvent. The use of a kinetically controlled exchange reaction to effect regioselective modification of a hydrogen-bonded assembly is discussed. The pseudo-regioselective exchange of isotopically labeled G 35-d into [G 8-h]16 4K+ 4pic- is demonstrated. Both the bound anion and cation can control the exchange of ligand into the different layers of a synthetic G-quadruplex. This regioselective exchange process allows for functionalized G-quadruplex structures to be built. Covalent capture of lipophilic G-quadruplex 60 with reactive groups on the periphery generates a unimolecular G-quadruplex 61. This unimolecular G-quadruplex 61 shows exceptional stability in nonpolar and polar solvents, even without the presence of cations. Furthermore, this unimolecular G-quadruplex transports monovalent cation across phospholipid membranes. The design of transmembrane transporters is of particular interest for their potential as new ion sensors, catalysts and anti-microbial agents.