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    Versatile and open software for comparing large genomes

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    No. of downloads: 284

    Date
    2004-01-30
    Author
    Kurtz, Stefan
    Phillippy, Adam
    Delcher, Arthur L.
    Smoot, Michael
    Shumway, Martin
    Antonescu, Corina
    Salzberg, Steven L.
    Citation
    Versatile and open software for comparing large genomes. S. Kurtz, A. Phillippy, A.L. Delcher, M. Smoot, M. Shumway, C. Antonescu, and S.L. Salzberg. Genome Biology 5:R12 (2004), http://genomebiology.com/2004/5/2/R12.
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    Abstract
    The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternative ways to analyze genome alignments. The new system is the first version of MUMmer to be released as open-source software. This allows other developers to contribute to the code base and freely redistribute the code. The MUMmer sources are available at http://www.tigr.org/software/mummer.
    URI
    http://hdl.handle.net/1903/8002
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