# Simulation source code for "Myosin and α-actinin regulation of stress fiber contractility under tensile stress"


## General Information

### Author Information

* ###### Haoran Ni
* ###### Qin Ni: qin.ni.0909@gmail.com
* ###### Garegin A. Papoian
* ###### Andreea Trache
* ###### Yi Jiang: yjiang12@gsu.edu

### Sharing and Access

The code provided here is for MEDYAN v5.4.0 and is made available for academic and research purposes only. By downloading the MEDYAN source code or this version code you agree to the terms of the [MEDYAN license](https://github.com/medyan-dev/medyan-public/blob/68fb800969e6fb926846afe08f222552d6507b72/license.txt). MEDYAN Copyright 2015-22 Papoian Lab.

Any academic or research works resulting in a publication that has used any of the MEDYAN distributions’ source code must cite the following paper:

Popov K, Komianos J, Papoian GA (2016)
MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks. PLoS Comput Biol 12(4): e1004877.
doi:10.1371/journal.pcbi.1004877


### Funding Source

This work was supported by Public Health Service grants R01CA201340 from NIH/NCI and 1R01EY028450 from NIH/NEI, and the endowment for Frady Whipple Chair in Mathematics at Georgia State University (to YJ), and the grant CHE-2102684 from the National Science Foundation (to GAP).
The authors acknowledge the University of Maryland supercomputing resources (http://hpcc.umd.edu) made available for conducting the research reported in this paper.


## Data Format & Overview

### Inventory

1. README.md
1. medyan-5.4.0.zip

### Description

#### Source code

The file `medyan-5.4.0.zip` contains the code necessary to compile MEDYAN v5.4.0, which was used to generate the results presented in the manuscript. With this repository, please consult the documentation available at https://medyan.org for information on building and running the code. Contact the authors if additional information is needed.