id_01_data_engineering
purf-package-installization
retrieving-p.-vivax-protein-variables
immunological-data-sets
proteomic-data-sets
structural-data-sets
genomic-data-sets
final-assembly
generating-ml-input
id_02_model_training
hyper-parameter-tuning-for-purf
analysis
pv-data-set
pv-pf-combined-data-set
plotting
pv-data-set-1
bimodal-distribution-plot
known-antigen-ranking
pv-pf-combined-data-set-1
bimodal-distribution-plot-1
known-antigen-ranking-1
results-for-positive-level-0.5
id_03_model_evaluation
known-antigen-prediction-accuracy
analysis-1
pv-model-cross-species-predictions
pf-model-cross-species-predictions
adversarial-controls
analysis-2
pv-data-set-2
pv-pf-combined-data-set-2
plotting-1
mean-differences-in-scores
investigation-of-known-antigen-groups
labeled-known-antigen-accuracies
id_04_model_comparisons
known-antigen-score-comparisons
known-antigen-prediction-summary
score-and-species-association
tree-depth-analysis
analysis-3
plotting-2
id_05_model_interpretation
proximity-matrix-calculation
analysis-4
pv-data-set-3
pv-pf-combined-data-set-3
plotting-3
pv-pf-combined-data-set-4
clustering-of-predicted-positives
analysis-5
comparison-of-amino-acid-frequencies-between-species
analysis-6
variable-importance
analysis-7
pv-data-set-4
pv-pf-combined-data-set-5
plotting-4
pv-data-set-5
pv-pf-combined-data-set-6
comparison-of-top-10-important-variables
venn-diagram
top-10-variables-from-combined-model
id_06_top_candidate_comparisons
clustering-analysis
analysis-8
gene-ontology-analysis
analysis-9
plotting-5
candidate-antigen-characterization
processing-table
id_07_summary_of_candidates
