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Fischell Department of Bioengineering Research Works
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Complete genomic sequence analysis of infectious bronchitis virus Ark DPI strain and its evolution by recombination (2008-12-22)An infectious bronchitis virus Arkansas DPI (Ark DPI) virulent strain was sequenced, analyzed and compared with many different IBV strains and coronaviruses. The genome of Ark DPI consists of 27,620 nucleotides, excluding ...
(2010-01-12)Background: De Bruijn graphs are a theoretical framework underlying several modern genome assembly programs, especially those that deal with very short reads. We describe an application of de Bruijn graphs to analyze the ...
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies (2011-04-13)Background: Next-generation sequencing technologies allow genomes to be sequenced more quickly and less expensively than ever before. However, as sequencing technology has improved, the difficulty of de novo genome assembly ...